rs48813965 SNP Detail

Summary

• ID
  rs48813965
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134484380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG ATTTAGGGCA CAGGCTGCGC
  T
  CTTGGGGTGC AGGCCGGAGT TGGAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145508295	ENSMUSSNP1475537	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss319983155	CHEV_1_136453219	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48813965					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134484380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	within coordinates
Gm57134	predicted gene, 57134	within coordinates
Rr367005	regulatory region 367005	318 bp upstream
Rr418945	regulatory region 418945	within coordinates
Rr418946	regulatory region 418946	651 bp distal
Rr418947	regulatory region 418947	208 bp distal
Rr418948	regulatory region 418948	450 bp proximal
Tssr13798	transcription start site region 13798	345 bp downstream