rs48815523 SNP Detail

Summary

• ID
  rs48815523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCCAGG TCCCTTTCAA
  GGCCAATACA ATTCATATAG TTAACAGAAA TGTACTTTAG ATACACTTTT GCATTAGGTT
  TCTGCCGTTT TCCGTGGCTC TTTTTCCAGT ACCACATCCT GTCTCTTGTG TTTCCTTTTT
  CTATTCTTTA AATGTATCTA TACCCTAAGC TTATGAGTCC TCAGATTTCT AGAGATTTGC
  R
  TTTTATTTCT AGATGAGTCG TCACAGCTTG CTTCATGCCC TCGTCCCTCC ATGCTCCTCT
  TTCTGGAGAA GTTTCTGCCT TTTCTCTTAG TTGTCCTTAC TTTCGATGTC AAGACAGCAC
  GGGGGAAGAC CTGGGCCGGT TCCCCTCCCC ACTGCCCTTT CTCATGTGCC TACTGCTCTT
  CTTCCCATTT AGAGCCAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148004013	ENSMUSSNP3660122	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48815523					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	1524 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	1145 bp upstream
Rr567738	regulatory region 567738	1156 bp distal
Rr567739	regulatory region 567739	1055 bp distal
Tssr20916	transcription start site region 20916	1643 bp downstream
Tssr20917	transcription start site region 20917	1627 bp downstream
Tssr20918	transcription start site region 20918	1599 bp downstream