About   Help   FAQ
rs48817047 SNP Detail
Summary
  • ID
    rs48817047
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr17:48990418 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAACTATGAA AGTCTCACAG
    ACTGGAGAGA AGACGTCATC TGAAGCACTA TAGAGTGTTG TAGCTGCCCA GTCCCTCTCA
    CTGCCACCTT GTACCTCATG GGAGCCATCC CAGGCCTGAG CCTGGAAAGA ACCTGACCTG
    TAACAGGACC TCTGAATGTC GTACCTGAGC AGGAAGTAGC AGATATAAAG CTGGGAGCCG
    K
    AGGAAATGAC AAACCAAGAC AAGTGCTACC CTTCCTGCCT CAGCTGTCTT TTTGAGACCC
    CTCCTGGAGA ACAGGCAAGC TGTGTGTCCA TTTATCACGA GCTGAAGACA GGAGGTGAAG
    AAGTGTAGGT AAGAAGAGGG TGTCTGGTGG TTCTAGAAAG TACGATTGAG GCGGGGTAAA
    ACTGATTCCG CTTACAGAAC                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss62763749 NES17344123 PERLEGEN MM_PANEL2 f SNP T T T T T T G T T T T G G T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs48817047 SNP T T T T T T G T T T T G G T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss62763749 NES17344123 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:48990418 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Tssr148548 transcription start site region 148548 420 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory