rs48817588 SNP Detail

Summary

• ID
  rs48817588
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114158592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCACTG GATGCCAACC
  AGAAATGCAG AGAACCTGGT ACCTGCTGAC TTCATACCAT TGGATGCCTT TGAGACTCCA
  AATTAGTGCT AGGGAGCTGG AAGATCCCTG GATTGTCTCT GAGACACTCA CAACCACAGC
  AGAGAGCAGA CACAAAGCAC AGGAGCAGCC CAGGACACAC ATGCCCTGAA GGAGGCTCCT
  G
  TGATAGCTTG TTAGCCAGGA CTCGGCCTTC AGCCTTGTAC TGTGGGTTAT TTTTTGCATA
  GAGGGCGCTC CTGAGGAAGA ATGAGTGGAT CTGGAGACAG TGGCGAATCT ATTTGAGAAG
  GATTAGGAAG TTTCTTTCTG TTGGGCAAAA TATGTCAGTG AAGTAAGGCT TATGACTTGA
  AATGATTTAT CCCATTCTCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138771774	ENSMUSSNP1844241	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48817588					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114158592 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv3-3	immunoglobulin heavy variable V3-3	1467 bp downstream
Tssr118065	transcription start site region 118065	1952 bp downstream