rs48818791 SNP Detail

Summary

• ID
  rs48818791
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117805840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCTGCCT ATGCAGGGAT
  GGCATGGACC TGTCTCACAG ACATGGTCAA AGGCTAACCT GTTGAAAGCA ATTTCTTATT
  TGAGATTTCC TCTTCCTAGG TCTATTTACA TTTGTGTCAA GCTGACAGGA AGTAACCAAG
  CATAGGCTGC ATAATGAAGG CTTCTAAAGT GGGAAGGTCC AGTGGTCTAA ATAGGTTCCC
  R
  ATGATAGCTA GGTTCCAAAT GCTTTGCTAC TTCAAACCAA TGCTCCCTTT ACAATAGGGA
  TTTGCTGTAT GTAGTCTACA GTAGAAATAA TAATAGAAAT AACTGCAAAC ACAGCCCTTA
  GATCACAGGA AGATACAATT ATCTTAGACT AAAACTAGCT TTGATTAATA CATTTTTACT
  GTTCTTCCTG GCAACCTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52609124	NES15505552	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48818791					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52609124	NES15505552	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117805840 () rs orientation: forward

Symbol	Name	Function Class
Cdca7l	cell division cycle associated 7 like	1369 bp upstream
Cpgi5229	CpG island 5229	1150 bp proximal
Rr265167	regulatory region 265167	960 bp proximal
Tssr3984	transcription start site region 3984	1335 bp upstream
Tssr115551	transcription start site region 115551	1384 bp upstream
Tssr115552	transcription start site region 115552	1589 bp upstream
Tssr115553	transcription start site region 115553	1741 bp upstream
Tssr115554	transcription start site region 115554	1768 bp upstream