rs48818991 SNP Detail

Summary

• ID
  rs48818991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:82408602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAATTGA TATATAAGAC
  TTATCAGAGT TATAAGCTAT CAGAACTTGT AGTAAGCCTA TACCACTAAC AGGGAAGGGG
  GAACTGGGGC CACTTGCCAG GAGTAATATG CAGTATACAA CAAGTGCATT GCTAAGATTT
  ATGAGCAGGT TTTCCATCTG TACTGTAGGA CAGTTTTATA AGGGGTGGAA AATACACAAT
  Y
  GTGACATCTT GGCCTCCTAG TATTCTCCTA GGACATGACC AGAGATGGAA GTTTGATAGA
  GACAGATTCT CATCTTAAAC TCTTTATGTG ATTTTTTTTT TTTTACTGTT AACAAAGAAA
  CCCTAAGGGC ATTGCTGGAA AAAATCTGGG TGGAATAGTA CATGTTCTTC AGTAGTCAAT
  GAGAAAGTGA GATAAACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61858010	NES17782249	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48818991					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61858010	NES17782249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:82408602 () rs orientation: forward

Symbol	Name	Function Class
Gm48155	predicted gene, 48155	1523 bp downstream
Gm59879	predicted gene, 59879	within coordinates
Rr277316	regulatory region 277316	802 bp distal