rs48819145 SNP Detail

Summary

• ID
  rs48819145
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23588658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGG AAAGAGAAGA AGGCTGTGGC
  G
  ATGCTTCAGA AAGCCCTTCT GAAGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148055821	ENSMUSSNP5350893	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321488650	CHEV_5_22889478	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48819145					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23588658 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Rr608078	regulatory region 608078	1549 bp proximal
Rr608079	regulatory region 608079	1646 bp proximal
Rr608080	regulatory region 608080	1868 bp proximal