rs48819343 SNP Detail

Summary

• ID
  rs48819343
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139287412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCCAAAA TTCTTAGACC
  AGCCTGGAGC CCAGACTAAG AAAATACGAA TTTCTACATT GAAGTCCTTA GGGGCTTTTT
  ATTTTGTCTG TCAAGATAAC CTAATATCAA ATCAACCAGA AAACATTCTT ATTTTATATT
  TGCTTTCAAA GTCCTCCTAC ATCTTCTAGA CAACTTTATT TCCTTTATTA GAAAAAAATT
  K
  TTTTGCTTGA AACTTCCTCT TTCTGATTTG AAAAGCTGTG TTTTTCACAG CTTTAGTCTT
  GATTTCTGTT TCGGTTTCTT TCTTTTTATA TTAATAAATG CTGTTCTTTG ACAATTTCAT
  ACATTCTGGT TACTTTCTCC CAACCCCTTA TTTTCCTTCA GGGCCTGCCA GTCTGACTCC
  TTCCATATAA ATCCCTGCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147661630	ENSMUSSNP5439669	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48819343					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139287412 () rs orientation: forward

Symbol	Name	Function Class
D2Mit339	DNA segment, Chr 2, Massachusetts Institute of Technology 339	742 bp distal