rs48819545 SNP Detail

Summary

• ID
  rs48819545
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19123892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTAATTCTTG ATCTTAGTGT CTGAGGCATG GGTGCTGTTC
  TTAGGAAGCT GTCTTCTGTA CTGATGAGTT CAAGGCTATT TCCCACTTTC TGTTCTATTA
  G
  ATTTAGTGTA TCTGGTCTTA TATTGAGCCT TTGATATACT GGGACTTTAG TTTTGTGCAG
  GGTGATAAAT ATGAATCCAG CTAGGCATTG GTGGTGCACG C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146077563	ENSMUSSNP1797458	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48819545					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19123892 () rs orientation: forward

Symbol	Name	Function Class
Cnbd1	cyclic nucleotide binding domain containing 1	1342 bp upstream
Gm42258	predicted gene, 42258	within coordinates
Tssr1124	transcription start site region 1124	1250 bp downstream
Tssr36571	transcription start site region 36571	1211 bp downstream
Tssr40994	transcription start site region 40994	1368 bp upstream
Tssr40995	transcription start site region 40995	1361 bp upstream
Tssr40996	transcription start site region 40996	1337 bp upstream