rs48819639 SNP Detail

Summary

• ID
  rs48819639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76130510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGGAAC TCGCTCTGTA
  GATCAGGCTG GCCTCAAACT CAAGAGATCC ACCCGCCTCT GCCTCAAGGC ATGTGCCACT
  ACCACCCAGC TGTGAATGCT GTGTCTTAAA GCAAGCAAGT GTCTGGGTGT CGTGGTTCGT
  GTTGTAAGTG TAGTTGGAAA GCTAAGGCAG GAGGACTGCC CCATGTCTGA GGTAAGCCTG
  Y
  GTTGCATAGT GAGTTCCAAG CCAGCTGTGG TTACTGACTG AGACCTTGTC TCAAAATGAA
  AGGCCAAGAA GGACTCTCCA AGAGTCCTTG GAGGCTTCAG TAAATCCTGG ATTTAGGAAT
  CGATATTGAA TTCATCAATA GAGAGCTACA TAAGCTAAAG AGAGTCTTGC CTCCCGAAGT
  CGTTAGCACC CACGCCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394611496	MGP_WTSI_15_76076740	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	C	T	C	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs48819639					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	C	T	C	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394611496	MGP_WTSI_15_76076740	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76130510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7222	CpG island 7222	176 bp proximal
Grina	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	454 bp upstream
Mir6953	microRNA 6953	1881 bp upstream
Tssr4637	transcription start site region 4637	267 bp downstream
Tssr131720	transcription start site region 131720	437 bp upstream
Tssr131721	transcription start site region 131721	506 bp upstream
Tssr131722	transcription start site region 131722	528 bp upstream
Tssr131723	transcription start site region 131723	702 bp upstream
Tssr131724	transcription start site region 131724	1061 bp upstream
Tssr131725	transcription start site region 131725	1216 bp upstream
Tssr131726	transcription start site region 131726	1288 bp upstream
Tssr131727	transcription start site region 131727	1354 bp upstream
Tssr131728	transcription start site region 131728	1374 bp upstream
Tssr131729	transcription start site region 131729	1513 bp upstream
Tssr131730	transcription start site region 131730	1534 bp upstream
Tssr131731	transcription start site region 131731	1597 bp upstream
Tssr131732	transcription start site region 131732	1622 bp upstream
Tssr131733	transcription start site region 131733	1667 bp upstream
Tssr131734	transcription start site region 131734	1684 bp upstream
Tssr131735	transcription start site region 131735	1751 bp upstream
Tssr131736	transcription start site region 131736	1795 bp upstream
Tssr131737	transcription start site region 131737	1968 bp upstream
Tssr134959	transcription start site region 134959	299 bp downstream
Tssr134960	transcription start site region 134960	1302 bp downstream
Tssr134961	transcription start site region 134961	1704 bp downstream
Tssr134962	transcription start site region 134962	1834 bp downstream