rs48820057 SNP Detail

Summary

• ID
  rs48820057
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57806756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCT GTGCAAGCAG GCTAAGGCAA
  T
  GGCTGGCTTC TTCAGTGCTC AGCAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132183784	ENSMUSSNP1190409	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss323686490	CHEV_11_57729432	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48820057					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57806756 () rs orientation: forward

Symbol	Name	Function Class
D11Mit143	DNA segment, Chr 11, Massachusetts Institute of Technology 143	1102 bp distal
Gm33078	predicted gene, 33078	within coordinates
Gm73794	predicted gene, 73794	within coordinates
Rr250602	regulatory region 250602	1157 bp distal
Rr250603	regulatory region 250603	within coordinates