rs48820775 SNP Detail

Summary

• ID
  rs48820775
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172195989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC TTTACTCTTT CTTCTCTGCT
  M
  CACCTCTTCC CCAAATCACA GAGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009829	PARCsnp_1.18993	PARC_SEQ	INBRED	f	SNP	A	C
ss120013111	PARCsnp_1.08823	PARC_SEQ	INBRED	f	SNP	A	C
ss320124575	CHEV_1_174298553	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs48820775					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172195989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	507 bp proximal
Cpgi1046	CpG island 1046	1362 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	Intron
Rr423550	regulatory region 423550	546 bp proximal