rs48821002 SNP Detail

Summary

• ID
  rs48821002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95940919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGAGCCC CAATGGTGGG
  GATTCTTGAC AAGAGATAGC AGTGTATCCG CCATACCTTG TCACCTTGGG GTCCGGGGAG
  CAGCATTGTC AATCTAGCGC TATAGTTCAC ACTGTCTATC TAATCTACAA GTTTCTTTCC
  TCTTGGAGCT AAGGACTGAC CGCAGGATCT TGTAGGTGTC AGTCAAACAC TTTCACAGAC
  Y
  ATGTGTTTAT CACCTCCTTA CTTTCTGCCA TCTCAGCTTT TTGTCAAATA ACTCAAAAGG
  AGTGACGATT TCTCCCTCAG GGAAGGCAGT CAGCAGAAAT AGTCTGGTGA TGGGAAATGA
  GCGTCCCCAT CGGCCAGCTG CTGCTTCGCT TTACGCTTTA CTCCTGTGTG GCCTTTGAAA
  GTTCCTTCAG CAATCTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144995992	ENSMUSSNP1480459	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48821002					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95940919 () rs orientation: forward

Symbol	Name	Function Class
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr277718	regulatory region 277718	within coordinates
Rr285448	regulatory region 285448	1082 bp proximal