rs48821040 SNP Detail

Summary

• ID
  rs48821040
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79179368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGACTT GTTCAAAGCA
  GTTCCTAGCT AGCCTCCTCC ATGGAAGAGT TCTGACTCCT TGCAGATGAG GTAAGAGCTA
  GATAGATCTG TGCATTTTTA CAGGCATTCC TTGAAGTCAG ATTTGCAATT TTCTGTGTTG
  TAATTAAGGT AGTGTTTAGA CTTTTAGGAC CAGAAATAAA TCAGAATTCC GAGATAAACA
  M
  CATGTCTACA GTTAGTGGAG AACTATTAGT ACTGTGGCAT CACATTTCAA TACCTGTTTG
  GTATCTGACC CAAATACGGC TAGCATGTCC CCAGTTGTCT CAAGCACCAT TCACAAATCT
  TTTCTGCTGC TGTGACTATG ATTTACACAG TCGATAGAAA GCTTTGGCGA CAGGAATGCA
  GAATCAGGGT GAACTACAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61653362	NES17602684	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48821040					SNP	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61653362	NES17602684	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79179368 () rs orientation: forward

Symbol	Name	Function Class
Arg2	arginase type II	within coordinates
Cpgi4801	CpG island 4801	1082 bp distal
Rr468550	regulatory region 468550	1807 bp distal
Rr468551	regulatory region 468551	217 bp distal
Tssr3873	transcription start site region 3873	1805 bp downstream
Tssr114077	transcription start site region 114077	1778 bp downstream
Tssr114078	transcription start site region 114078	227 bp downstream
Tssr116820	transcription start site region 116820	411 bp upstream
Tssr116821	transcription start site region 116821	379 bp upstream
Tssr116822	transcription start site region 116822	1942 bp downstream