rs48821396 SNP Detail

Summary

• ID
  rs48821396
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13438019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGCTTTT CCGTGACAAG
  CTCAGGGACT GGTCGGATTC TGCTTCTTGT CCCCGGTCTT GGGGTCAAGT CAGGGTCAGG
  GTGTTTTAGC TTTGGCCCTT TTACCCTACA CTGGCTTGTC ATTCTTAGCT GTGGACGCGA
  TTTGTTCCAC TAAGAATAGT TTACCAGTCC AAGGCATATA GCATCCCATG GTTGGAGAAA
  W
  ATAGCAGGTA AAACTATGAG CACCTGTTCA GCATCTCATT TAATCACTAC GTCAAACCTC
  AAGTCCAGTT ACACAGCACG GAGGGTTTAA GTAGTGCTCT CTAGCGTAGT ATTTACACTA
  CAGTTTAAGT GATTAGTATT AGTGGTTGAG ATGTTTGGTT CAGGCTGGGT GCCCATTCTC
  TTGGAAATGT ATGTCCTTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52145417	NES15236880	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48821396					SNP	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52145417	NES15236880	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13438019 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Gm66583	predicted gene, 66583	141 bp upstream
Rr427807	regulatory region 427807	1960 bp proximal