rs48822405 SNP Detail

Summary

• ID
  rs48822405
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152336101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTAAGAT ACTTCAACAC
  TGAGAAAATA AGCAAAGAGG TGCTAATGGA CAAAGAGGAT CAAACTATGA GCACTGAAGC
  CATCCAAGGC CACAGCTCCT CTAAAAATGA AAGAGGGACA CCCCTCAGTG CTACAGGGTC
  TAAGTGTTCC CTAGAGGCAA AGAGAAACCC CTGCATGTTT GTCAATTCCA CACAGTTATT
  K
  GGAAGAGGAA ACACAGCTGA GAAAATATCT CCATCAAGTT TCCTGTAGGA AAGTCCGGAG
  GCCATTTTCT TGATTAATTA TTTATGTGAG AGGTCCCAAT GTGTGGAGGG GGCTGTCACC
  CTGGACAGTG GTCCTGAGTT GTTTAAGAGA GCAGCTGAGC AAGCCAGAAG CAACTCAGTA
  AGCCGTGTTC CTCCAAGGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145731286	ENSMUSSNP92176	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48822405					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152336101 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420464	regulatory region 420464			1022 bp distal
Rr420465	regulatory region 420465			1429 bp proximal