rs48823054 SNP Detail

Summary

• ID
  rs48823054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCACTACT AGCCTCCTGG
  TGCTGCATCT TTCAGAAAAG GATGAGTGGT GTGATGGTCT GATGGAATTG GTGTGTCAAA
  AGAGGTCGTA CATCAATGGA ATCTCTGAAA AATCTGCTAA TAGGAACATG TTGCCTGGCT
  GGGAAGGGCA GCCAGAGAAA TATATGACAG GTAGTATGGA GCAGGAGGAC AAAAGTGCCC
  R
  GCAAAATACT ATATGCCATC TACATATCAT TTTTAGATAG ATGATGATGA GGTGGTGGTA
  GTAAAATTGG TGGTAGGAAC CCACAACATA GTTCCCTCTA GGTAACAATC AGGCTGTAAC
  TAGAGGCCAT TGCTGGGAGA AACACAGAGG TGATCTGAAT CTTGATGTCT TAAGGCCCAG
  TATAGAATGG AGAAGAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133020619	ENSMUSSNP656945	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48823054					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1762 bp proximal
Gm55211	predicted gene, 55211	1513 bp upstream
Rr626833	regulatory region 626833	290 bp proximal
Rr626834	regulatory region 626834	1664 bp proximal
St7	suppression of tumorigenicity 7	1667 bp upstream
Tssr55085	transcription start site region 55085	1694 bp upstream
Tssr55086	transcription start site region 55086	1992 bp upstream