rs48823917 SNP Detail

Summary

• ID
  rs48823917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26052163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CAAGCTGGGC GAACGTGGCA GCGGTCATTG AGAAGTGGCC TTCCGAGGGC
  Y
  GGTCACTAGG CCCGGGTCCT AGCGCACCAC CAGGGCACAC ACGGGCTCAC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60255645	NES15703163	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48823917					SNP	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255645	NES15703163	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26052163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8785	CpG island 8785	within coordinates
Gm20683	predicted gene 20683	1276 bp downstream
Gm56915	predicted gene, 56915	within coordinates
Jmjd8	jumonji domain containing 8	1346 bp downstream
Mir3082	microRNA 3082	1761 bp upstream
Rhbdl1	rhomboid like 1	1276 bp downstream
Rr405106	regulatory region 405106	70 bp downstream
Rr523679	regulatory region 523679	211 bp distal
Rr523680	regulatory region 523680	162 bp proximal
Stub1	STIP1 homology and U-Box containing protein 1	270 bp upstream
Tssr143193	transcription start site region 143193	35 bp downstream
Tssr146863	transcription start site region 146863	312 bp upstream
Tssr146864	transcription start site region 146864	223 bp upstream
Tssr146865	transcription start site region 146865	176 bp downstream