rs48824225 SNP Detail

Summary

• ID
  rs48824225
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4268485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCACTTTA GTTTAGTTTG
  CCAGCTCATG GATCCAGTGG GGCAGGTGTG CCTTATAAGG CATCTTACCC ATAGAGGATG
  TTAAACCAAG ACCCTGGTCT GTAAGGGATC TCTGAAGTAT ATGGGCTCAT TGAGTTGGCA
  TTTTGGGCTG TACAGCCAAT ACTCTAGAGA TACAGGCAGA AGGCTCCTGA GTTCCGGGTC
  M
  GCCTGGGCTA CTTAAGGTTT ATTGACTCAT CACAGTGCTA ACTAGATAAA AGAAATGAGT
  CCAGGAACAT CTTCAAAAGT TTCAGAAGGA GGGCTAGCAA GCAGCTGGAA TGAGGTCTGC
  TGGACCTAGA ATTAAGAGCA TTTTCAGGGC TGGCCATGTA GCTCAGTTGG CAGAGTATTT
  CTGTGGCATA CAAAAAGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148555710	ENSMUSSNP2196360	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48824225					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4268485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	1042 bp distal
Prr36	proline rich 36	1026 bp upstream
Rr658993	regulatory region 658993	683 bp distal
Tssr80256	transcription start site region 80256	1482 bp upstream
Tssr80257	transcription start site region 80257	1442 bp upstream
Tssr80258	transcription start site region 80258	1359 bp upstream
Tssr80259	transcription start site region 80259	1317 bp upstream
Tssr80260	transcription start site region 80260	1233 bp upstream
Tssr80261	transcription start site region 80261	1184 bp upstream
Tssr80262	transcription start site region 80262	982 bp upstream