rs48824487 SNP Detail

Summary

• ID
  rs48824487
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93869972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACT TTGAAGTTCT TATGATGCTC
  G
  TAAAAGCACC TTTTGAGTGC TGGAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147378526	ENSMUSSNP484797	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss323407255	CHEV_10_93496855	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48824487					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93869972 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	1196 bp proximal
Fgd6	FYVE, RhoGEF and PH domain containing 6	1891 bp upstream
Gm49628	predicted gene, 49628	within coordinates
Rr402165	regulatory region 402165	1605 bp upstream
Rr437370	regulatory region 437370	628 bp proximal
Rr437371	regulatory region 437371	1585 bp proximal
Rr437372	regulatory region 437372	1851 bp proximal
Rr437373	regulatory region 437373	1902 bp proximal
Tssr95293	transcription start site region 95293	1339 bp upstream
Tssr95294	transcription start site region 95294	1934 bp upstream
Tssr95295	transcription start site region 95295	1947 bp upstream
Tssr98985	transcription start site region 98985	1618 bp downstream
Tssr98986	transcription start site region 98986	1661 bp downstream
Tssr98987	transcription start site region 98987	1679 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	within coordinates