rs48825025 SNP Detail

Summary

• ID
  rs48825025
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141935370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAAAGGCCAG GTAAGCAGGA TGCTAGCTGG ACTCCTAGCC
  AGGTGACAGG ATTTGCAGCT TCCTGCCCCA TCCTGGCAGG ATTGATCTCT GGTCCCTGCA
  A
  CCCTGCTGTC CTGATGCAAA CCCAGGAGTG AATGGCCTCT CCTTTAAAGA AGGCTAAAAC
  GATAAGATCT TCCTACAGAC AAAGAGCCCA GTCCAGACAC T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145986053	ENSMUSSNP2361635	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48825025					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141935370 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Rr368483	regulatory region 368483	111 bp downstream
Rr658151	regulatory region 658151	70 bp distal
Tssr70137	transcription start site region 70137	835 bp downstream
Tssr70138	transcription start site region 70138	787 bp downstream
Tssr70139	transcription start site region 70139	768 bp downstream
Tssr70140	transcription start site region 70140	741 bp downstream
Tssr70141	transcription start site region 70141	720 bp downstream
Tssr70142	transcription start site region 70142	673 bp downstream
Tssr70143	transcription start site region 70143	991 bp upstream
Tssr70144	transcription start site region 70144	1793 bp upstream
Tssr75774	transcription start site region 75774	824 bp upstream
Tssr75775	transcription start site region 75775	819 bp upstream
Tssr75776	transcription start site region 75776	798 bp upstream
Tssr75777	transcription start site region 75777	747 bp upstream
Tssr75778	transcription start site region 75778	734 bp upstream
Tssr75779	transcription start site region 75779	699 bp upstream
Tssr75780	transcription start site region 75780	683 bp upstream
Tssr75781	transcription start site region 75781	665 bp upstream
Tssr75782	transcription start site region 75782	637 bp upstream
Tssr75783	transcription start site region 75783	983 bp downstream
Tssr75784	transcription start site region 75784	1816 bp downstream
Tssr75785	transcription start site region 75785	1836 bp downstream
Tssr75786	transcription start site region 75786	1866 bp downstream