rs48825041 SNP Detail

Summary

• ID
  rs48825041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:87689308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG CTCAGCACAG TACCTGTCTA
  Y
  TATGGTGGGC TTTGAGGACA GTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139905527	ENSMUSSNP4861701	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324697511	CHEV_14_87851679	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48825041					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:87689308 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr404242	regulatory region 404242			338 bp upstream
Rr496366	regulatory region 496366			within coordinates
Rr496367	regulatory region 496367			400 bp proximal
Tdrd3	tudor domain containing 3			Intron
				Noncoding-Transcript-Variant