rs48825706 SNP Detail

Summary

• ID
  rs48825706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156045866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCA TACCTACTGG GACCAACCAG
  Y
  GTGTGTTAGG GATGCAGCTC CAGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444084	CHEV_4_155335518	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48825706					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156045866 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	909 bp upstream
Cpgi15495	CpG island 15495	895 bp proximal
Gm42365	predicted gene, 42365	1335 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606617	regulatory region 606617	1677 bp distal
Rr606618	regulatory region 606618	1955 bp distal
Rr606619	regulatory region 606619	419 bp proximal
Rr606620	regulatory region 606620	1704 bp proximal
Tssr40744	transcription start site region 40744	883 bp upstream
Tssr40745	transcription start site region 40745	933 bp upstream
Tssr40746	transcription start site region 40746	1002 bp upstream
Tssr40747	transcription start site region 40747	1132 bp upstream
Ube2j2	ubiquitin-conjugating enzyme E2J 2	1805 bp downstream