rs48825962 SNP Detail

Summary

• ID
  rs48825962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12216518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTTTTTG GTTAATTCTT
  ATGGCTTTGG TGCTGATGAT GGTTATGGTT TATGGCTTTC ATGCTGTGCA GGTGTGCTGT
  CGCTGAGCTG CGTGCGCAGG CCTGCGTGGT TAATCGGCAC TATTCCTGTC ACCTCAGAGG
  CTGCAGGTGC GCTTGACCTG CCCAACATTT GCCTTTCCTG AGCTGAGTGA GCATCAGGAA
  R
  TGGGCTGAGA AGGAGGTGCC CCGAGAGTGA GAGTGTGGAC AAGCCTGTGA TTCTGTGGGT
  CTCCTGTTGG GATTCAGGCA CTTGATGGTG ACCTTAGACA TGGGTCTGTC ACTTCTTTGA
  GACTTCTCAT TGTAGAATTT GGACATCTTC CTTGAGGGCT AGTTTTGAAG AAGAGAAGAA
  ATAAACCACA GTTCACCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52532046	NES15597963	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48825962					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52532046	NES15597963	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12216518 () rs orientation: forward

Symbol	Name	Function Class
D15Mit1005	DNA segment, Chr 15, Massachusetts Institute of Technology 1005	1886 bp proximal
D15Mit1006	DNA segment, Chr 15, Massachusetts Institute of Technology 1006	1750 bp proximal
Mtmr12	myotubularin related protein 12	within coordinates
Tssr130728	transcription start site region 130728	1213 bp downstream