rs48826515 SNP Detail

Summary

• ID
  rs48826515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117428807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA TTACAACACA
  CTCAGCAAAA CAGCCCAGCT CGAACTTTCC ATAGCCCATG GATCTGTTAG GGGCTTCTCT
  GCATTGCTTT GCAATCACGA GCACAAACTC ACATCCAAAT TAACTCCATT CAACTCTGCT
  TCCAGTTCCT GACACTTCCT TTCAACCCAG TACCTCTCTC TGCTAGGTCC TCACCAATAA
  R
  CCATCAATAC GTGGTAAGTC TGTTCACTCG CTTTATATCT ATAAAGCGTT CCACTTCAGT
  CTCTACTGAG TCTCTCCCAT TGTCATTTTA CCACAAATGA GTCCTGCCTT CTCTTCTTAA
  TCGGGACAGG AAATGTTCTA TATAGTGCAG GCTTATATTT CCCTTACTCA GAGGCTTCAT
  GTAATGATGA AGTCACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61320223	NES16929074	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss323497986	CHEV_10_117029958	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48826515					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61320223	NES16929074	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117428807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2233	CpG island 2233	1155 bp proximal
Gm63651	predicted gene, 63651	1824 bp upstream
Kifc5c-ps	kinesin family member C5C, pseudogene	1451 bp upstream