rs48827073 SNP Detail

Summary

• ID
  rs48827073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138951422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCCTTT AGAAACAATC
  AACTATTAAT AGCTTTTCAG TTAAGATAGG GCCTTGTAAG TCCTTTCTCC CCCCATTTTA
  GACCACTGAC TAGCTTGATC CTGTATAGGT TTAAAGCAGG CAACCATGCT TACTGTGAAT
  TCATGAGGGT GCTGTCATGT CTTGGGGATG CTATTTGACC CTGATCTTCT CCAACCTCTG
  R
  CTCTTATGAT CTTTTGTAGA CATTGGTATT TGTCTTAGTT AGGGCTTTAC AGCTGTGAAC
  AGACACCATG ACCAACGCAA GTCTTATAAA AAAAAACAAC ATTTAATTGG GGCTGACTTC
  CAGGTTCAGA GGTTCAGCCC ATTATCACCA AGGTGGGAGC ATGGCAGTAA CCAGGCAGGC
  ATAGCTCAGG TACAGCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss135962324	ENSMUSSNP6533310	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs48827073					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138951422 () rs orientation: forward

Symbol	Name	Function Class
Rr398077	regulatory region 398077	109 bp downstream
Rr586253	regulatory region 586253	within coordinates
Rr586254	regulatory region 586254	833 bp proximal
Rr586255	regulatory region 586255	1053 bp proximal
Stpg2	sperm tail PG rich repeat containing 2	Intron