rs48827078 SNP Detail

Summary

• ID
  rs48827078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80702217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCCCTAA GACCCTAGTT
  CTACTTGTCC TAAGCTGATT TTAAGTGTCA CCTAGTGGGG CTGGGCTTGA GTAGTTGAGT
  GTCTGGCCCA AGTGCTTCCT ATACAGGCAT CCAGGGCCAC CCACTGTCCT CACTGACCTG
  CACAGCCCTG GGTATGAGGT TTCAGGTCCT TCTGCCTCAG CTACCACGGT TCTGGGATCC
  Y
  GGCTTGTGGC TAGTGCTCTC CCCAATGACT GCCCTTGCAC CCCTCTGTGG TGGCACCCTG
  ACCAGGCATT GCTCCCCCCA GGTGCAGCTC GACTGACACT CTCTCTGTCC CTGCAGCCTA
  TGGCCTGGGC CTCCTGGTGA CCTTCGTGGC TCTTGTCCTC ATGCAGCGTG GCCAGCCTGC
  ACTACTCTAC CTGGTCCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61290432	NES16913229	PERLEGEN	MM_PANEL2	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs48827078					SNP	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290432	NES16913229	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80702217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1916	CpG island 1916	1695 bp distal
Sppl2b	signal peptide peptidase like 2B	within coordinates