rs48827400 SNP Detail

Summary

• ID
  rs48827400
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62109585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGGCTAG CCTTTCTCAA
  AGACTTGTGT GTGTGCAATT GTACACACAC TGCATGTACG AAGTCACTAC AAGATCTCAA
  ATAGCCAAGG CTAGCCCCAA ATTCACCACG TAGATGAGTT GGGCCTATAA CTCCAGATCC
  TCTGGCCTGT AACCCTTACG TCAAGCTTTC ATCATGCCCA AGAGGAGGAA ATGGAAAACT
  K
  AGGCATTCTT GGAAGCACAG TCGAGGGTAG GGAGGCTCAC GGGGTCGGAA CTGTTGGGAT
  CTGCGTCCCC AGCCCCCACC ATGCTTCTGC CTCTTGTCAC ACGCAAAGCA AATGTTTTTC
  TCAGTGTACT ATTTGTCGCC CCCCCCCCAA TACCAATCTT TAAAAGGCCT TACAGAACCT
  ATGGAGCTCT GGTTTGTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61279450	NES16892088	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48827400					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279450	NES16892088	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62109585 () rs orientation: forward

Symbol	Name	Function Class
Hk1	hexokinase 1	within coordinates
Rr215635	regulatory region 215635	1185 bp distal
Rr215636	regulatory region 215636	816 bp proximal
Rr230329	regulatory region 230329	1377 bp proximal