rs48828630 SNP Detail

Summary

• ID
  rs48828630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12568653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTA ACACCAGCAC TTCCGGCCCA
  Y
  CCCCTTGCCC ATGCCTAGCT TCCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148340662	ENSMUSSNP3304565	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322106498	CHEV_7_13420075	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48828630					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12568653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	within coordinates
Rr642383	regulatory region 642383	within coordinates
Rr642384	regulatory region 642384	199 bp proximal
Rr642385	regulatory region 642385	267 bp proximal
Rr642386	regulatory region 642386	768 bp proximal
Tssr64479	transcription start site region 64479	17 bp upstream
Tssr64480	transcription start site region 64480	247 bp upstream
Tssr64481	transcription start site region 64481	522 bp upstream
Tssr64482	transcription start site region 64482	1224 bp upstream
Zfp110	zinc finger protein 110	35 bp upstream