rs48828926 SNP Detail

Summary

• ID
  rs48828926
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172029463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGCCTTTA GAACGTGGAT TGTTAAAATG TAAAACTCCA
  GTGGTAAGCT AAAATCAGGG ATCTGAGCAT AGTAGCGTAG CCTACAATTT CAGTACTCAG
  S
  AGTCTGAGGC AGGAAGATTG CTGCAAGTTT AAGGTCAGTC TGGACTACCA GGCAAAACCT
  TGTTTCACAT AAGGGCCAGT TTTCTGCAAT GAGTATGTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss120007308	PARCsnp_1.17732	PARC_SEQ	INBRED	f	SNP		G	C
ss120010204	PARCsnp_1.07369	PARC_SEQ	INBRED	f	SNP		G	C
ss146183744	ENSMUSSNP6293644	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs48828926					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172029463 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	within coordinates
Tssr15161	transcription start site region 15161	1394 bp upstream
Tssr15162	transcription start site region 15162	1341 bp upstream
Tssr15163	transcription start site region 15163	1307 bp upstream