rs48829129 SNP Detail

Summary

• ID
  rs48829129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85528733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC TACTTTGATT CTGAAACATT
  R
  GGTTACAGGT CCTTTGGGAC AAACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148269056	ENSMUSSNP5221351	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325042408	CHEV_15_85474962	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs48829129					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85528733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7486	CpG island 7486	1443 bp proximal
D130051D11Rik	RIKEN cDNA D130051D11 gene	within coordinates
Gm62280	predicted gene, 62280	within coordinates
Lncppara	long noncoding RNA near Ppara	1569 bp upstream
Rr507251	regulatory region 507251	827 bp proximal
Rr507252	regulatory region 507252	1198 bp proximal
Rr507253	regulatory region 507253	1919 bp proximal
Tssr132525	transcription start site region 132525	1157 bp upstream
Tssr132526	transcription start site region 132526	1547 bp upstream