rs48829892 SNP Detail

Summary

• ID
  rs48829892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:11505126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAAGTGT TTGGAAAGTA
  CATATCAGGT GGAACTAGAA TGCACACCCT GCCTCAGTTA GCCCCAAGCC TATACCCAGA
  TCCAACTCAA CCCTACTCAG GATTATACTG CTTATATTGA AGCTACTACT TCCTTGTCTA
  ATCTGGTCAT CACAAATCCT TGTGTTTTTT AGAAAGAACC AGGTTGGAGA TCAAATTGTC
  Y
  TGTTTTCTTT GTATCTTTTC AGCCCCTGTT GGGGTGGCTA GAGCACATTG TGCTTGGTTG
  GATGCTGTGG GATTGTATCA TTGCAGTGTG CATGTAGAGA GTTTCAAGCA GCTTATGGAC
  AAAATGTCAA ACTTGTCCAG ACATGTCTTG TAGCAGAAAG ATTGCACATC AATGAATAGA
  CTGTTTATTT ACTCAGTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52615884	NES15504974	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C	C	C	T		T	T	C	C		C
ss324264608	CHEV_13_11582507	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48829892					SNP	C	C	T	C	T	C	C	C	C	T	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52615884	NES15504974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:11505126 () rs orientation: forward

Symbol	Name	Function Class
Rr387978	regulatory region 387978	within coordinates