rs48830824 SNP Detail

Summary

• ID
  rs48830824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30258823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCTCCC ACCTTGTCTA
  TTTATCACCC TACACCCTAG CGTTATTGGA ATGCACAGCC AGTGAGGATT GATTCAGGGA
  CACTCCACAA TTGATGACTC ATGCCCACTG TCAGAAATGG GGAAAGTGAG GTAGAAAAAG
  AAAAGGACCC TTTTTAGAGG ATCCTGTCAT ATGGGCTGCA GAGAGATGTC GCGTACTCCG
  Y
  TTTTTCACTA TTAACATATC TCTCCTGGAT CCCCAGTCCT CACCTGATTT CTCCACTTTC
  ACCTTTACCG GGAACATGAT TTGGGTGCAG GTCTAATGCG CTGGATCAGA AAAACTTGGA
  GGAGGTGTGG TTCAAAAGCT AGGCGGAAGG CGGGCAGGGA AAGGTCAAAG GTAAGTCTGG
  GCACCACTGG TCCTCGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60990765	NES16136529	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48830824					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990765	NES16136529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30258823 () rs orientation: forward

Symbol	Name	Function Class
Lin37	lin-37 DREAM MuvB core complex component	within coordinates
Rr400243	regulatory region 400243	197 bp upstream
Tssr71791	transcription start site region 71791	651 bp upstream
Tssr71792	transcription start site region 71792	613 bp upstream
Tssr71793	transcription start site region 71793	100 bp downstream
Tssr71794	transcription start site region 71794	202 bp downstream
Tssr71795	transcription start site region 71795	430 bp downstream