rs48830854 SNP Detail

Summary

• ID
  rs48830854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:58319142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTGCTAT TTTAGGAGGA
  AAAAACTGAA GGGCTGAGAG AAGTTTCCCA CCTGACATAT AGCAGAACCA TGACTCAAAC
  TGTATCTGTC ATAACAGGAT CTTTATACGC ATCGCCTCTC CCAGAGGCAC GCTTCACAGA
  TGACCAGTTC TGTGCTTCTA ACACCAGATC AAACATTACA GAGTGTTTCT ATAGCTGCCA
  R
  TTCCACCCAT TTCTTCAACA GAATTATCAC AGCGTCAATT AATAAAGTGG AAAGTTGACA
  GTCTGACACA AATTCTGCTG AAATAAAACC CTATTATTCT CAACCCTCTT CCTTCCAACC
  TGCCCCTCCC CATCGTACAA AGCAAACCCT ATAAAATGGT ACTAGAAAAG TGGTCATATT
  TTTCTTTGTG GGGCCTCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60471655	NES16460351	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		G	A	G	A		A
ss325209504	CHEV_16_58498892	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48830854					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60471655	NES16460351	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:58319142 () rs orientation: forward

Symbol	Name	Function Class
Rr404899	regulatory region 404899	82 bp downstream
Rr517409	regulatory region 517409	within coordinates
St3gal6	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	within coordinates
Tssr4919	transcription start site region 4919	1068 bp downstream
Tssr4920	transcription start site region 4920	1094 bp downstream
Tssr138857	transcription start site region 138857	60 bp downstream
Tssr141615	transcription start site region 141615	554 bp downstream
Tssr141616	transcription start site region 141616	570 bp downstream
Tssr141617	transcription start site region 141617	603 bp downstream
Tssr141618	transcription start site region 141618	1040 bp downstream