rs48832144 SNP Detail

Summary

• ID
  rs48832144
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40553798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACACTGGC AGTAACTTTG
  GGCTTAACTT TAAGGTCTAT ATTCAGATCT CTGAGGTTTG ATAAGGACAC TCCCAACGCC
  CAGGCACTCT GAATGTACCT CAGCCTGAAT TAAACCATTA TCATGAACAA TGCCTGGTCT
  ATCCGTTTCC CCTTCATCCT CAGTATTCCT CCTTTAATCC CATTTAGATT TTGGATTACT
  T
  GGCTGTCCCT GTCACACCCT GGGAGTCTAA GCTCATGTGC CCTCATGTGC TTTCCTCTGA
  ACCTGCAATA GGTGGTAGGA AAACCTCAAA TCCTTTTGGG ATTTGAGCTA GTTCCACAAT
  TAGCATGAAT ACATGATTTT ATTTATTTAT TTATCTATTT ATTTATTGGC TTAGACCTGC
  CCTCAGTTGC TAACTCTTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss148982878	ENSMUSSNP2041271	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs48832144					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40553798 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	750 bp upstream
Rr410075	regulatory region 410075	276 bp proximal
Rr410076	regulatory region 410076	735 bp proximal
Tssr65	transcription start site region 65	857 bp upstream
Tssr6477	transcription start site region 6477	739 bp upstream
Tssr6478	transcription start site region 6478	804 bp upstream
Tssr6479	transcription start site region 6479	833 bp upstream
Tssr11438	transcription start site region 11438	577 bp downstream
Tssr11439	transcription start site region 11439	1809 bp downstream
Tssr11440	transcription start site region 11440	1819 bp downstream
Tssr11441	transcription start site region 11441	1837 bp downstream
Tssr11442	transcription start site region 11442	1853 bp downstream
Tssr11443	transcription start site region 11443	1884 bp downstream