rs48832380 SNP Detail

Summary

• ID
  rs48832380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84585905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTGACTA GGGCTGGGGC
  CACAGTGTTG GCAAAACCAG GATCCCACAG GGGACTAACT ACAGTCACAC AGAATGTCTG
  TTCCCTGCAC CTGTCTAGCC TTGCTGTGTG TAGATGTGGA CCTTCAGGGT AGACGGGGTA
  TTGGAGGGTA TCGGGCAACT CCCAGAACAG TGATGGCTCT CCACAGAGAC CCGCCATGCG
  R
  AGAGCCTCCA TCATCCCTGT GCTAGCTCAG AAAGGAATAC AGAGAAAGTA GGCCCTAGAG
  AGCCTGCTGG GTCCCTCAAA AGCCTGCCGT GTCCTCCCTG TTCATTCAGG AATGTCCCTT
  GGGCACTTGC TGTGTACCAG CCCAGAGACC AAGCCCAGCC TTCCTTCATA GCTTTGGCCT
  AGCAGGAAAG ATGGGTCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148254525	ENSMUSSNP1205944	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325039413	CHEV_15_84532134	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48832380					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84585905 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr304869	regulatory region 304869	705 bp distal
Rr304870	regulatory region 304870	96 bp proximal
Rr304871	regulatory region 304871	1896 bp proximal
Rr314876	regulatory region 314876	849 bp distal
Rr314877	regulatory region 314877	195 bp proximal
Rr404546	regulatory region 404546	337 bp upstream