rs48832380 SNP Detail

Summary

• ID
  rs48832380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:84585905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTGACTA GGGCTGGGGC
  CACAGTGTTG GCAAAACCAG GATCCCACAG GGGACTAACT ACAGTCACAC AGAATGTCTG
  TTCCCTGCAC CTGTCTAGCC TTGCTGTGTG TAGATGTGGA CCTTCAGGGT AGACGGGGTA
  TTGGAGGGTA TCGGGCAACT CCCAGAACAG TGATGGCTCT CCACAGAGAC CCGCCATGCG
  R
  AGAGCCTCCA TCATCCCTGT GCTAGCTCAG AAAGGAATAC AGAGAAAGTA GGCCCTAGAG
  AGCCTGCTGG GTCCCTCAAA AGCCTGCCGT GTCCTCCCTG TTCATTCAGG AATGTCCCTT
  GGGCACTTGC TGTGTACCAG CCCAGAGACC AAGCCCAGCC TTCCTTCATA GCTTTGGCCT
  AGCAGGAAAG ATGGGTCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148254525	ENSMUSSNP1205944	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325039413	CHEV_15_84532134	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48832380					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84585905 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	Intron
Rr404546	regulatory region 404546	337 bp upstream
Rr507026	regulatory region 507026	953 bp distal
Rr507027	regulatory region 507027	1100 bp distal
Rr507028	regulatory region 507028	202 bp proximal
Rr507029	regulatory region 507029	464 bp proximal