rs48833733 SNP Detail

Summary

• ID
  rs48833733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:84407316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTTGGG GGTGTCTGAC
  TTTGAGTGTT AGGGTGATTT TTATTGTCTC AGTTGAGTCT TGTAGTGATA GAGGGAAGGT
  GGTGTGGCTG GAGGACAGTG GCCTGAGATG TCCTTAGAGT GGTAGGTACA AGGCCACCAG
  TGGACTATTG ATGATTAGTG GCAATTGGAG CAGTCCATCT GAGTTAGAGA TAAGTGTGTG
  Y
  TCTAACCCTA GCTCTGCTGC TGAAGAACAT GTGATCTAGA GCAAAACTCT CTCCTTCCCC
  TGCCCCTCTC TCTCTGTTGT GACAGGGTCA AAGGGCGACC TTGAACTCCT TATCCTTCTG
  CTTTAGTAAT TTGAGTTGTT GGGATTACAA GTTTGAGCCA TAATGCTGGC TCTTTCGTTT
  TAAAAACAAC TTTATTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61661755	NES17608514	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48833733					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61661755	NES17608514	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84407316 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq6	coenzyme Q6 monooxygenase			1214 bp upstream
Cpgi4867	CpG island 4867			1064 bp proximal
Fam161b	family with sequence similarity 161, member B			Intron
				Noncoding-Transcript-Variant
Rr403407	regulatory region 403407			1171 bp upstream
Rr469627	regulatory region 469627			1296 bp distal
Rr469628	regulatory region 469628			767 bp proximal
Rr469629	regulatory region 469629			851 bp proximal
Rr469630	regulatory region 469630			1269 bp proximal
Tssr114338	transcription start site region 114338			1094 bp upstream
Tssr114339	transcription start site region 114339			1459 bp upstream
Tssr114340	transcription start site region 114340			1487 bp upstream
Tssr116998	transcription start site region 116998			1240 bp downstream
Tssr116999	transcription start site region 116999			1260 bp downstream