rs48833794 SNP Detail

Summary

• ID
  rs48833794
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:79393252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCAGGAA TGCTAAATGG
  TCTTCTCAGG CTGCAGGCCG CATCCTTTCC CAGTGTCAGG CCTTATGATG CAGGCAACAG
  AGCTAAGTCA GTTCCTGGGG TGTGTTTCTA GCAGAAGAGT GGGAGTAAAG TGGGAGAATT
  TTCTATTAGG ATTATTGAAA AACCAAATGA TTCCTGAGGA AATCCTACAA GCTCCACACC
  R
  GCAAAGCACA GGCAAGGGAG ATCAGTGACA TTGCACCGCT GATCGTTGGT TCTGTGGCGT
  TTGAAGATGG AGCCCCACTT AGTAATTTTC TTCTTTTCAC CGCTTCTCCC TCCTTCCTCG
  CCTCATTACC TCTCCCCTGT CTTTCTGTTT ACCCTACCCC TTTATGATAT TATTCCAGCA
  ATGACTCTGA TGGCTTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61025352	NES16102218	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48833794					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61025352	NES16102218	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79393252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19314	CpG island 19314	275 bp distal
Gm44706	predicted gene 44706	1488 bp downstream
Pex11a	peroxisomal biogenesis factor 11 alpha	373 bp upstream
Rr649701	regulatory region 649701	331 bp distal
Rr649702	regulatory region 649702	81 bp distal
Tssr67364	transcription start site region 67364	335 bp downstream
Tssr67365	transcription start site region 67365	317 bp downstream
Tssr73125	transcription start site region 73125	528 bp upstream
Tssr73126	transcription start site region 73126	508 bp upstream
Tssr73127	transcription start site region 73127	471 bp upstream
Tssr73128	transcription start site region 73128	416 bp upstream
Tssr73129	transcription start site region 73129	391 bp upstream
Wdr93	WD repeat domain 93	Intron