rs48833959 SNP Detail

Summary

• ID
  rs48833959
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:117387085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCA CGCCTTTAAT CCCAGCACTC
  R
  GGAGGCCAAG GCAGGTGGAT CTTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145405752	ENSMUSSNP4643963	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss324543521	CHEV_13_118039356	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48833959					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:117387085 () rs orientation: forward

Symbol	Name	Function Class
Emb	embigin	within coordinates
Rr270627	regulatory region 270627	1485 bp distal
Tssr121224	transcription start site region 121224	1103 bp downstream
Tssr121225	transcription start site region 121225	830 bp downstream
Tssr121226	transcription start site region 121226	37 bp upstream