rs48836360 SNP Detail

Summary

• ID
  rs48836360
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30804208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACCAGGA AGAAGTGGTC
  AAAACACCCT TTTTTTCATA CCTGCAGTAA TAGGATCTTC AGAAACAGAG GGACTATGTA
  TGGTGGGTCA AATGGCCATC AAGCGTGTTT GGGGGTTTTT GTTTTTACCT GTGGTAGGGC
  ATGAGCTGCC AATCACATGG AACAGGAAGG TAGGCAGCTG GCAGCTGAGA ACCCACTCCC
  C
  TAGGTTGTTC CCTGACCTCC ACATGTACCA CATATGCCTT GAAAGTGCCC TCCAATAACA
  CACAAATAAA TAAATTTATT TTTTAACAAA CTGACAGCCA GTCATGAACT GGAGTCCATC
  TTGGAGTACA CAGTGAGCTG GAAGACAGTC TGGCTTATAT AACAAGATCC TGTCTCAAAA
  ACTAATTAAT TAAATGCTAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148186572	ENSMUSSNP2510268	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48836360					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30804208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	869 bp proximal
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	324 bp proximal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Mir5625	microRNA 5625	1072 bp upstream
Slc35f6	solute carrier family 35, member F6	1069 bp upstream
Tssr45603	transcription start site region 45603	1057 bp upstream
Tssr45604	transcription start site region 45604	1071 bp upstream
Tssr45605	transcription start site region 45605	1141 bp upstream