rs48836999 SNP Detail

Summary

• ID
  rs48836999
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44463736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCCACGT CTGTAATCCT GCTCTGTGGC TGCTTGACTG
  CACCCCATAC CTATGTCTTC TCTCCTTTCC TTGCTTGTTC AGTTATTATT GGTGATAGAG
  W
  CTTGTGTAGA CTAGGCTGGC CTTGGACCTG CTTTGTAGTC CGTGGCTGAG GACAACCTTA
  AACATCTGAC TCTCCCAGAG TGCTAGGACT ATTCACCAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149122991	ENSMUSSNP1152378	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322199699	CHEV_7_52069682	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48836999					SNP	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44463736 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	within coordinates
Cpgi18994	CpG island 18994	1437 bp proximal
Nup62	nucleoporin 62	1776 bp upstream
Rr400297	regulatory region 400297	1460 bp upstream
Rr646219	regulatory region 646219	1336 bp proximal
Tssr66425	transcription start site region 66425	972 bp downstream
Tssr66426	transcription start site region 66426	1617 bp upstream
Tssr66427	transcription start site region 66427	1978 bp upstream
Tssr72229	transcription start site region 72229	968 bp upstream
Tssr72230	transcription start site region 72230	1307 bp downstream
Tssr72231	transcription start site region 72231	1352 bp downstream
Tssr72232	transcription start site region 72232	1597 bp downstream