rs48837207 SNP Detail

Summary

• ID
  rs48837207
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91176130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACATTCAA GTTCAGTCAT
  GCTGGGCAAA ATACTTCTGT GCTTCCTGAA AGCTGGAGCT AACAGAAAAC TGTTAACTAG
  GGCTGTTGTG AGGACTATAT AAACCAGTAG GCTCTTGGTA AGTCTTAGGT GAACACATGA
  GGCTCCCTTA TGAAATGGAC CTAGAAGTGA CTCATCTCTT TGCAATGTTG AGAGTCAGGC
  R
  TATTGGTTCA GCTGTTCCAG CTGTATCTGC CTCTTCAAGC CCTTATCTTT TCTCACCAGA
  ACTTTGCACA AACTCATGCA GTACTTGCCC AATAACACTG GTTCTGAACA CCTGCCATGG
  GTCCAAAGAA GAGCGGGGAG AGCAAGAGGG GGTGCCGGGG TGAGGAGCCG TAAGAAAGTG
  CTGTTTAAGC TTAGGAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60767820	NES16403398	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48837207					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60767820	NES16403398	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91176130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	1488 bp proximal
Rr366958	regulatory region 366958	1537 bp upstream
Tssr8065	transcription start site region 8065	1785 bp upstream
Tssr8066	transcription start site region 8066	1889 bp upstream
Tssr8067	transcription start site region 8067	1903 bp upstream
Tssr12938	transcription start site region 12938	1632 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	1282 bp upstream