rs48837214 SNP Detail

Summary

• ID
  rs48837214
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30815629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTCTTCCTCT TTGGTCTCCT GCTTACTTCC GTCTCTGCTC
  CTATCTCTTT CTCTCTGACT CCATCCATCC TTGCTCTGTC TTAGTGTATT GCCCTTCCAC
  M
  CCCCCCCCCC CAAACTTTTA CTCTCAGTTT TCAGAGTATA GCAAGACCTA CAAAACCCTG
  ACATACAGTT GTCTGTCCTG AGGATTCCAA AGCCACCTCT G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148699928	ENSMUSSNP2010983	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48837214					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30815629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	80 bp distal
Hpn	hepsin	914 bp upstream
Rr645021	regulatory region 645021	933 bp distal
Rr645022	regulatory region 645022	424 bp distal
Rr645023	regulatory region 645023	392 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	320 bp downstream
Tssr71932	transcription start site region 71932	1488 bp upstream
Tssr71933	transcription start site region 71933	896 bp upstream
Tssr71934	transcription start site region 71934	688 bp downstream