rs48837285 SNP Detail

Summary

• ID
  rs48837285
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:82964703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCCTCG GCACCAGCTG
  GGAAGATTAG GAAATCGGTG TCTGTTCCCA ATCAAAGTTT TTATCCTGAG TGAGGAACAG
  AAGCAACGCT GGACTCAAGT TTGTCTAATC GTAGGATGCA GGTTCCTCAA TTGGTTCCTC
  TGATCCAGGC CTCAACCCAG AGTTCTGGTC AAGGGGCCCC AGTAATGCTA TGCAGCTCCG
  W
  CTCTATCAGA TGGCCCTGGA GGCATCTCTT GGGTGCAGGG CGCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCACACA CACACACACA CACACACACA CAGGCTTTTG CTGATTATTC
  TGAGATACTG GTAGCTGTGC CATCCATATC CTGAGGTATT CAGATATTGC CCCAGCCAGG
  GGGATAAAGA GCTGCACATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52389735	NES15267971	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48837285					SNP	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52389735	NES15267971	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:82964703 () rs orientation: forward

Symbol	Name	Function Class
Chst11	carbohydrate sulfotransferase 11	Intron
Gm67967	predicted gene, 67967	1312 bp upstream
Rr435928	regulatory region 435928	1222 bp proximal
Rr435929	regulatory region 435929	1755 bp proximal