rs48839562 SNP Detail

Summary

• ID
  rs48839562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATCCTC AGAAACTGAG
  CATTCACGGT CTGGCCGCAG AAATCCCCGC CATTCACAAC CAACCTGGGA TGGGTTTATG
  ATGCCAGCTA CATGGAAGGC TGAGGCAGGA GGATTCTAAA TTTAAGGCCA GCTGGGGCAA
  CTGACTGAGA CCCTATCTCA CAATAAAAAG TAAACGGAGA CCTGAGAATT CAGCCTCGTG
  R
  TAGGGAGTCT GCCTAGCATG CCTTTGAAGC ACTAAATTCA ATCTCTAGCA TCGAAGAAAA
  GTCATTAACG TTCCTTTGCC TCCTCTGACT CTGCCACAGG GTTCAGGCCA AGCATCCTAG
  AAGCACAGTA CAGAAAGTAG GCATTCACCC TGAGCATGAT GAGACACACC TAGAGTCAGC
  CTACCTTGAA GCTTTCAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132716425	ENSMUSSNP524826	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss323830217	CHEV_11_99853976	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48839562					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	879 bp proximal
Krtap17-1	keratin associated protein 17-1	572 bp downstream
Tssr110721	transcription start site region 110721	1330 bp downstream