rs48839655 SNP Detail

Summary

• ID
  rs48839655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52648866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTTTTAA AATTATTTTC
  TCATGCCAAG TTGGAGGAAA GATGGGAGGA CGAGGAGAAG GGAAAAAAAA AAAAAAGAAA
  CTCTAGTTAA ATTAAGTAGT AACTTGCCTT GTCCTTCGGT AGTTCGTTTG TTAATGAATT
  GAGACAGTTT GTATAGGTGT TGTACAGGAC TATCTTCTGA AACAAACAAA ATCTATCTTA
  Y
  CACATTCTGT AATGTCTACT GGCAAAAGAT CATCTCAGCT GGGCTTGTTG ACCCACACCT
  GCTCATAAAG GGGCAGGGAG GTCAGGCGAC CCTTACCTGA GTATCCACCC TACCTACTGT
  AGTACGCAAT TTTATCCATA ACTAGAAGTG GCCTCGCTGA GGGGAGGGGT AGAGTCTGTA
  ACCTAGGAAG ACTAAGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52424049	NES15399320	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	C	C	C	C	C	T	C
ss137738283	ENSMUSSNP7198730	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48839655					SNP	T	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52424049	NES15399320	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52648866 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	within coordinates
Cpgi4596	CpG island 4596	891 bp proximal
Gm24859	predicted gene, 24859	1705 bp upstream
Rr387217	regulatory region 387217	1557 bp downstream
Rr403283	regulatory region 403283	1570 bp upstream
Rr466025	regulatory region 466025	within coordinates
Rr466026	regulatory region 466026	225 bp proximal
Tssr116285	transcription start site region 116285	228 bp downstream
Tssr116286	transcription start site region 116286	280 bp downstream