rs48839729 SNP Detail

Summary

• ID
  rs48839729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79617676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATAGTTG GTATGTGCCA
  TCACCCAGGT ACTGGGATCA AAGTTAGAAC CCAAGACCCC TGCTGCCCAG GGATGGCAGC
  TGCATGGAGA TCCCCCTGCT ATGATCTCCC CACCTGCTTT CTAGGCTGGA GCTGTCGCAG
  GGCACAGCCG ATGAGTTGGT GTTTGCATAT GGCTGGCCTC AGACCAGAGC GGGCAACATC
  R
  GGTCAGAGAA ACACTGGGCT CATTCCTGTT TGGTCCACTC AGGGTGAAAC CTGGTAGAAA
  CATTGGACCC TGGCTGACTC ACAGGCCCAG GACAGCCAGT GGACACTAGG ATTCACTGTG
  CCCAGAGCAC CCAGAGTCAC TCTAGCACCC ACTGCCCTGT ACCCTGCACA CCCACATTAG
  TTTTTACGCA GTTCCCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52386765	NES15268973	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48839729					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386765	NES15268973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79617676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1811	CpG island 1811	437 bp distal
Fstl3	follistatin-like 3	within coordinates
Prss57	serine protease 57	within coordinates
Rr216651	regulatory region 216651	325 bp proximal
Rr216652	regulatory region 216652	1125 bp proximal
Rr225111	regulatory region 225111	275 bp distal
Rr402023	regulatory region 402023	1494 bp downstream
Tssr94390	transcription start site region 94390	858 bp downstream
Tssr94391	transcription start site region 94391	681 bp downstream