rs48839972 SNP Detail

Summary

• ID
  rs48839972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104695434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACATTTA TTCTGGGAAA
  TACTTGTTGA AACCTATGAC GAGCAGAGTT TGGTTGAATG GTACAGAGGG CAGGTAGGAG
  GGGGAGCATG GCAGGCAGCA GGCAGCCAGC ACCTGCCTGG GTGCCTCACA GGCCTGCTTG
  TAAATTTGAC TGATTTAGTT TTTGTAGCCC AGGATGGCCT GGAATTAACT CATAGAGATC
  Y
  ATCTGCCTTT GCTTCTTGTG TGTCATCGTG GCTCACCTCA CTGGAAATTC CTGCTGTCAC
  AAATAGTGAG AAACCACTTC TCTGGGCTTC ATTTTCTTTA CAGGCAAAAG GGAACGGGTA
  TGGGTGAACT TATTCCAGAG TTAGAGACCT GTGTGTTTAA AGTATCCAGC ACTAGTAAAT
  AAAGCATTGG TAGATTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ
ss60431857	NES15936365	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T		C	C
ss135571341	ENSMUSSNP4701113	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					C			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ
rs48839972					SNP	C	C	C	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431857	NES15936365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104695434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	426 bp proximal
Gm66976	predicted gene, 66976	191 bp downstream
Rhoc	ras homolog family member C	916 bp upstream
Rr77009	regulatory region 77009	166 bp proximal
Tssr31056	transcription start site region 31056	454 bp upstream
Tssr31057	transcription start site region 31057	675 bp upstream
Tssr31058	transcription start site region 31058	724 bp upstream
Tssr31059	transcription start site region 31059	908 bp upstream