rs48840062 SNP Detail

Summary

• ID
  rs48840062
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18999581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCACCAGG GAGCAGCTGG TCCAGCCTTG GGGGGGGGGG
  GCAGTGCCGA GGAGGCCACT GGCTGATGTA GGAAAACAAC AGCTCAAATA TAGAGTCAGA
  C
  ACCACAGACC TTGGTTCAAA TTCTCCACCA AACCCTTCTT CCACATGACC AGAGAGCTCC
  TCATGTCTCT CATCTGTCAC TTAGGGAAGA CATGATGGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148471830	ENSMUSSNP674996	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322116786	CHEV_7_19851005	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48840062					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18999581 () rs orientation: forward

Symbol	Name	Function Class
Tssr64812	transcription start site region 64812	640 bp upstream
Tssr70883	transcription start site region 70883	1173 bp upstream
Tssr70884	transcription start site region 70884	828 bp upstream
Tssr70885	transcription start site region 70885	333 bp downstream
Tssr70886	transcription start site region 70886	886 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates