rs48840329 SNP Detail

Summary

• ID
  rs48840329
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107093270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGAGGA AAAATTAGTC
  TTTTGGCCTA ATACCTGACC CCTTGTACAG GATCCGTGGA CAGGAAACAT GGACAGTTAG
  TACTGACAGG CAAGTCTTGA TTTCCACAAA GAGCAAGACG TATGTCACCC TCGAACCTGA
  CTCAGTGTTT TAAATTGCAA AATGTGACTT TGAAAAAGAC TCATTACCTG TATTTTTGTT
  W
  CATGGGAACT TTGACCTCAC CAATGGCACA TCTACTCTCT ATAGCTTCCC CACCAACACG
  CACACACAAA CACACACACA CCTAATATGG GACACCTAAT TCACAGAGTG TACAGACTCA
  CCCAGTAGAC AATCCCATGA GGAAATCTTG GATAAAGAGA GGATAGCTTC CACCCAGAGC
  ACTGGGGATA AGCTTAGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61696992	NES17648994	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48840329					SNP	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61696992	NES17648994	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107093270 () rs orientation: forward

Symbol	Name	Function Class
Gm16084	predicted gene 16084	within coordinates
Rr369597	regulatory region 369597	644 bp downstream